PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09200.3
Common NameLR48_Vigan09g105900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 329aa    MW: 36559 Da    PI: 8.6534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09200.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19162211356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +kGVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  Vang06g09200.3 162 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 211
                     8******9.**********955...5************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.43E-31160220No hitNo description
Gene3DG3DSA:3.30.730.105.2E-31161219IPR001471AP2/ERF domain
SMARTSM003802.0E-33161224IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-22161219IPR016177DNA-binding domain
PROSITE profilePS5103222.049161218IPR001471AP2/ERF domain
PRINTSPR003674.1E-10162173IPR001471AP2/ERF domain
PfamPF008477.9E-12162211IPR001471AP2/ERF domain
PRINTSPR003674.1E-10184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKEEAPLATW ISHIPEKFNG PQDIKNVRER NRSNSIFPAS GTKNSSIPLN LLETLPPLTM  60
APCFDEPVAS LASSSAPPNF PNLTLVLQEP SMVYSSSSNM KSGEVMSVTS NPTYQVPHFG  120
QNQHQGCSDA HKTNKNLKSF NENWLSSTRT QPMKYGGRGK LFKGVRQRHW GKWVAEIRLP  180
RNRTRVWLGT FDTAEDAAIA YDTAAYILRG EYAQLNFPDL KHVIQANSLN GTTAALVEAK  240
LQAISQGVSS HRKPTDSPAG LSNKHTDENG KLKSTNDKNS TMKEWQFDNT EKSKSIHHDI  300
SDVETFQLSR MPSLDMDSIW DELLVSNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A6e-21157218163ATERF1
2gcc_A6e-21157218163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513166.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A0L9VBG00.0A0A0L9VBG0_PHAAN; Uncharacterized protein
STRINGGLYMA10G33700.10.0(Glycine max)
STRINGGLYMA20G33890.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.15e-48ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]